Since the 1960s, the marshes in the Sanjiang Plain, Northeast China, which are an important reservoir for dissolved carbon, have undergone long-term reclamation to farmland, resulting in elevated marsh loss and degradation on a large scale. This study compared the concentrations of dissolved carbon, as well as the chemical characteristics of dissolved organic carbon (DOC), in natural marshes, a degraded marsh, and drainage ditches sampled during the growing seasons between 2008 and 2010 to clarify the temporal-spatial variability of the dissolved carbon in the fluvial system influenced by the long-term reclamation. The results show that the average concentrations of total dissolved carbon (TDC) and DOC are considerably greater in the natural marshes than in the degraded marsh and drainage ditches. The average DOC concentration for the natural marshes, approximately 35.53 +/- 5.15 mg L-1, is approximately 2.39 times that in the degraded marsh (14.84 +/- 4.21 mg L-1) and 2.77 times the average value in the ditches (12.84 +/- 4.49 mg L-1). The dissolved inorganic carbon (DIC) exhibits increased trends in the drainage ditches compared with the natural marshes, whereas the hydrophobic fraction of DOC is present at lower concentrations in the degraded marsh and ditches. Fluorescence indices also indicate that the DOC in the degraded marsh and ditches has a simpler humification structure. In total, the long-term reclamation has led to great variability in the DOC concentration and chemical characteristics in the fluvial system. Changes in the DOC production potential and hydrological regimes due to sustained reclamation are deemed the predominant causes of this effect. The continuously decreased DOC concentration and high variability of DOC in the surface fluvial systems are inevitable if reclamation continues in the Sanjiang Plain. More importantly, the presence of tyrosine and tryptophan-like substances in the ditches indicates that there has been extensive agricultural organic pollution in the fluvial systems. This pollution could lead to more unexpected impacts on the downriver aquatic system. To avoid a destructive ecological crisis in the future, adjustment of the reclamation policy and agricultural management measures in the Sanjiang Plain is urgently needed.